PhD position in Computational Biology/Bioinformatics at Monash Biomedicine Discovery Institute, Monash University

Employer: Monash University

Closing date: 31st dec, 2017

Brief position description: PhD position is available for highly motivated trainee in the led of Computational Biology/ Bioinformatics at “Epigenetics and Gene regulation Laboratory” within Biomedicine Discovery Institute (BDI), Monash University, Melbourne, Australia.
BDI Monash University is one of the largest and most successful biomedical research institutes in Australia. e BDI brings together more than 100 teams in a highly interactive environment, with access to truly world-class infrastruc- tures. For details, please look at- https://www.monash.edu/discovery-institute
 

Our laboratory research interest focuses on- how epigenetic and epi-transcriptomic changes regulate gene expression programs in ES cells, neural stem cells and di erentiated cells under normal and pathological conditions, such as, can- cers and neurological disorders. We use various experimental approaches including - Cell and Molecular Biology, Biochemistry, CRISPRs, CRISPRs screens, ChIP-seq, RNA-seq, m6A RNA-seq, m5C RNA-seq, WGS, ATAC-seq, RRBS, Hi-C, proteomics and bioinformatics.


For research details, please see:
http://www.med.monash.edu.au/anatomy/research/epigenetics-and-gene-regulation.html
Requirements for Computational Biology students:
e candidates should have computer science, mathematics, statistics, system biology and bioinformatics related backgrounds. ey should have excellent communication and writing skills, able to work independently and in teams. Experience working with commonly used bioinformatics tools, as well as on di erent types of NGS data- ChIP seq, RNA-seq, ATAC-seq would be plus. Candidates with rst author/ co-author publications are encouraged to apply, it will be plus to obtain Monash Scholarships.


If you are interested, please send a cover letter, CV and contact information for 3 references via email to me-Dr. Partha Pratim Das. PhD (partha.das@monash.edu). Applicants must hold a Bachelor’s or equivalent degree with rst-class Honours, Master of Science, or MPhil.


Notes: International students encouraged applying for Monash-based scholarships support. PhD students will be fully funded during their study. For international students an English pro ciency test is required. Our laboratory is committed to diversity and equality.

Job website:

Contact name: Partha Pratim Das

Contact email: Partha.Das@monash.edu

Postdoctoral Position in Psychiatric Genetics, Yale University School of Medicine

Employer: Yale University School of Medicine 

Closing date: 31/12/2017 

Brief position description: Postdoctoral position available in the Division of Human Genetics at Yale Department of Psychiatry. The primary research focus will be to investigate the predisposition to psychiatric disorders and behavioral traits using genome-wide data. Expertise in one of the following areas is required: genetic epidemiology, bioinformatics, statistics, or related fields. Applicants must have, or be about to be awarded, a Ph.D. and/or M.D degree.

The successful candidate will work with Dr. Renato Polimanti (http://bit.ly/2w7VZlT) on projects funded by the Brain & Behavior Research Foundation, the American Foundation for Suicide Prevention, and the Simons Foundation Autism Research Initiative. Further studies of substance use disorders will be carried out in collaboration with the group of Dr. Joel Gelernter via genome-wide investigations of a deeply-phenotyped cohort including more than 13,000 subjects. Please email your application including a cover letter, a detailed CV, and contact details of 3 referees to renato.polimanti@yale.edu. 

Job website: http://postdocs.yale.edu/yale-postdoctoral-positions 

Contact name: Renato Polimanti 

Contact email: renato.polimanti@yale.edu

Research fellow in computational biology / statistics, Melbourne

Employer: University of Melbourne

Closing date: 01/10/2017

Brief position description: The Centre for Stem Cell Systems is seeking a skilled research fellow to work on our exciting large-scale data integration projects conducted at the Centre. The Research Fellow in Computational Biology/Statistics will have the unique opportunity to work at the interface between stem cell biologists, bioinformaticians, and statisticians in contributing to novel and innovative statistical developments to integrate different sources of biological data available on matched biological samples (transcripts, miRNA, proteomics, metabolites, etc) to identify molecular signatures, as well as further refine or characterise subtypes of human stem cell.

Job website: http://careers.pageuppeople.com/422/ci/en/job/890666/research-fellow-in-computational-biologystatistics-readvertised

Contact name: Kim-Anh Le Cao

Contact email: kimanh.lecao@unimelb.edu.au

Postdoctoral Fellow - Environmental Genomics, QUT

Employer: Queensland University of Technology

Position title: Postdoctoral Fellow - Environmental Genomics, Science and Engineering Faculty

Closing date: 8/10/2017

Brief position description: 
Environomics—genomics for environmental science—is a frontier science that brings together advances in DNA sequencing, evolutionary biology, big-data and environmental modelling. Just as genomics has revolutionised agriculture and medicine, Environomics will shift Australia towards a whole-of-environment understanding of the genetic roots and relationships of our
biodiversity, from our evolutionary hotspots, to the trillions of microbes essential to our soils, to the genes that give plants drought tolerance. Environomics will allow us to see beyond the Australian landscape to the genescape, transforming our ability to manage our biodiversity and make use of the genetic resources locked inside.

We are seeking a capable and enthusiastic researcher, ideally with skills in biology, computing and statistics, to enable the development and application of quantitative tools and methods for metagenomic and environmental DNA (eDNA) analysis. Development of quantitative or semiquantitative methods for estimation of abundance in both metagenomics and eDNA is a key research focus. There are also research opportunities in metagenomics/eDNA analysis including genome assembly; clustering; search; sparse matrix analysis; visualization; and linking phenotype, space, time and abundance. In addition, we are looking for a researcher who can work with and manage very large datasets that include a mix of legacy and current (i.e., recently changing) data.

Within this breadth of possible research paths, the exact focus of the collaborative research will be determined in conjunction with CSIRO and QUT project leaders, and in consideration of how the appointee could best contribute. With this in mind, we are looking for someone who can add to our ideas and help shape the project’s research agenda.

We are looking for someone with the personal attributes and (ideally) experience to collaborate well with a range of stakeholders from different disciplines across QUT and CSIRO.

This position will sit within the School’s Data Science Discipline whose research focuses on computational methods for the analysis and understanding of the relationships embedded within large-scale data sets, including genomic and metagenomic samples.

This work is funded by the CSIRO Environomics Future Science Platform:
https://www.csiro.au/en/Research/Collections/Environomics

To view a full copy of the position description and to apply for the position please click on the link below.   Applications close on 8 October 2017.

Job website: http://qut.nga.net.au/cp/index.cfm?event=jobs.checkJobDetailsNewApplication&returnToEvent=jobs.listJobs&jobid=31263BB4-7430-9331-4E2D-9B706CDC4F37&CurATC=EXT&CurBID=1877E01E-78DD-4ED2-9D7A-9DB40135CFF4&JobListID=1ad2dcdd-b614-6387-c683-52af99b625ee&jobsListKey=7622474c-236a-4de7-a087-30e07a69df49&persistVariables=CurATC,CurBID,JobListID,jobsListKey,JobID&lid=84717980058

Bioinformatics PhD and summer scholarships, Victor Chang

Employer: Victor Chang Cardiac Research Institute, Sydney, NSW

Position title: PhD scholarships, summer scholarships (for undergraduate and Master's students)

Closing date: 16 October 2017

Brief position description: 

 The Victor Chang Cardiac Research Institute (VCCRI), established in 1994, is recognised as an international centre of excellence in biomedical research, with a focus on heart disease and cardiovascular biology. 

Applications are invited from those with a strong interest in bioinformatics and statistical genetics to join our rapidly expanding bioinformatics research program at the VCCRI, led by Dr Joshua Ho and Dr Eleni Giannoulatou. More details about our research activities can be found on our website http://bioinformatics.victorchang.edu.au/. We seek to fill the following positions: 

PhD scholarship (Multiple): We invite applications from individuals who have a Bachelor’s degree with honours in bioinformatics, computer science, statistics, science, engineering or a relevant quantitative field. A successful candidate is expected to be competitive for an Australian Government Research Training Program (RTP) or a similar scholarship. A successful candidate will be offered a top up scholarship of $6,000 per annum. The top candidate will also be eligible for the competitive VCCRI PhD scholarship which is worth an additional $10,000 per annum. 

Summer scholarship (Multiple): We invite applications from current students who are enrolled at an Australian University. Successful applicant will work on a bioinformatics project at the Victor Chang Cardiac Research Institute during the summer break (November 2017 - February 2018). Application from second or third year students are preferable, but we will also consider first year students.

For all positions, good programming skill in at least one language (e.g., R, Perl, C++ or Java) is essential. Previous experience in analysis of large-scale biology data is highly desirable.

HOW TO APPLY

Interested candidates should submit their curriculum vitae to Dr Joshua Ho at j.ho@victorchang.edu.au 

Job website: More information about these scholarships can be found here: https://www.victorchang.edu.au/careers/students

Senior Advanced Computing Specialist - Computational Biology, Victoria

Employer: Victorian Department of Economic Development, Jobs, Transport and Resources

Position title: Senior Advanced Computing Specialist - Computational Biology

Closing date: 26/9/2017

Brief position description: 
• $92,253 - $111,619 plus superannuation
• Ongoing
• Usual hours of work: full-time (flexibility may be available)
• Usual work location: Bundoora (flexibility may be available)

This is a pivotal role as a senior member of a small team providing and supporting the HPC and scientific computing capabilities of a leading-edge Life Sciences research organisation engaged in improving the productivity, efficiency and sustainability of the Victorian agricultural sector. You will be embedded with system end users and their collaborators, as well as interacting with contractors and external service providers. There will be opportunities for ongoing personal development, such as training and attendance at scientific computing conferences.

This role requires advanced skills in system and network administration and scripting, clustered and HPC computer systems, security, virtualisation and Petabyte-scale storage. Both Linux and Windows skills are needed. You should have the ability to design and implement solutions for automated transfer of data within, and between, systems and to ensure the security of both internal and internet-facing systems, plus advanced troubleshooting and diagnostic skills.

For a confidential discussion, please call Carl Thomas, Systems Manager – Biosciences Advanced Scientific Computing on (03) 9032 7007.

The position of Senior Advanced Computing Specialist – Computational Biology is part of the Agriculture & Rural Division's Biosciences Research Branch of the Agriculture & Resources Group. The Agriculture and Resources Group works with industry, primary producers, urban and regional communities to improve liveability and drive sustainable economic growth in the food and fibre, natural resources and energy sectors.

Successful candidates will be required to undergo a National Police Records Check prior to commencing employment with the Department.

For further information on the position, please see the attached position description. To apply, please click the ‘Apply Now' button below. Applicants are advised to provide a document outlining their skills and experience relating to the Key Selection Criteria listed in the position description.

Job website: http://jobs.careers.vic.gov.au/jobs/VG-021545B

Software Developer, Melbourne

Location: The University of Melbourne, Parkville, Victoria, Australia.

Closing date: 21 Sep 2017

Brief position description: 

This position reports to the Lead Bioinformatician for Clinical Genomics at Melbourne Bioinformatics, at The University of Melbourne. You will be involved in the development and improvement of various applications and systems for Melbourne Genomics Health Alliance (MGHA), which is a major healthcare initiative pioneering the use of clinical genomics in the State of Victoria. Your duties will also include building systems that interact with RESTful APIs; improving existing applications; and developing systems to support end-to-end testing. These systems will facilitate the storage and manipulation of DNA sequencing information, and will be critical pieces of infrastructure within MGHA, supporting the work of numerous clinical institutes and pathology laboratories. 

The position is predominantly back-end development with a focus on integration and automation. You will join an existing team of software developers and bioinformaticians and work closely with the MGHA project team.

Job link: http://jobs.unimelb.edu.au/caw/en/job/891623/software-developer

Bioinformatics Research Officer

Location: Melbourne

Closing date: Friday 22nd September

Brief position description:

A 6-12 month bioinformatics scientist position is available at GMDxCo.

The role is to analyse next-generation sequencing data and implement existing genomics pipelines and algorithms.

Applicants are required to have a PhD or Masters in bioinformatics or equivalent.

Experience dealing with next-generation sequencing data in a linux environment is essential.

Contact Nathan.Hall@gmdxco.com for enquiries, applications and a full position description

Job link: http://www.gmdxco.com/news-and-events/

Research Officer in Autism Genomics & Imaging, Melbourne

Location: Population Health & Immunity Division, Walter and Eliza Hall Institute of Medical Research

Closing date: Fri, 08/09/2017 - 5:00pm

Position description:

The position is a split appointment, with the successful applicant working 0.5FTE of the time on an NHMRC funded project grant about autism genomics (CIA Professor Ingrid Scheffer) and the other 0.5FTE on the joint analysis of functional magnetic resonance imaging data and transcriptomic data, but also with a focus on autism. Professor Melanie Bahlo will be the principal supervisor, with the successful applicant joining the Bahlo Laboratory.

The Bahlo laboratory has a long track record of developing analysis methods and software for genetic and transcriptomic data, in particular next generation sequencing data to identify the genetic causes of neurogenetic disorders. This postdoctoral position will combine genomic, transcriptomic and fMRI data to further understand autism in familial cohorts.

The appointee will undertake data processing and bioinformatics analyses of data generated by the autism research team. This includes next-generation sequencing data (whole exome sequencing, whole genome sequencing and RNA-seq data) and SNP chip data. The work is highly likely to lead to high-impact publications, to which the successful applicant is expected to contribute. The applicant will present the work at national and international conferences.

Applicants with a PhD in a relevant discipline are welcome to apply. Relevant disciplines include computer science, mathematics, statistics, computational biology or bioinformatics. Applicants need to have experience in the analysis of next generation sequencing data, both transcriptomic and genomic data, and demonstrate broad bioinformatics data analysis experience and an interest in learning about fMRI data analysis. The position requires high-level project-management skills, strong programming and data analysis skills (R, at least one of Python or Perl and strong unix skills) and, in particular, strong communication skills, to ensure excellent communication as the bioinformatician working within the autism research team, which includes clinicians and geneticists.

The Institute is highly supportive of women scientists. A new childcare facility will commence building in early 2017 with a proposed completion date of 2018. Attractive awards include a childcare fellowship (Craven and Shearer Award) and additional technical assistance (Page Betheras Award) during and after maternity leave. Mentoring programs and a strong postdoctoral association group contribute to an outstanding career opportunity for an ambitious postdoc.

The positions will be for 2 years in the first instance with a probation period of 6 months. Salary is dependent upon qualifications and experience. Up to 17% superannuation and attractive salary packaging options are available.

General enquiries should be directed to Professor Melanie Bahlo.

A position description is available.

Written applications including cover letter, CV and the names of 3 professional referees should be emailed in PDF format to jobapplications@wehi.edu.au, quoting reference WEHI/CAMBSD in the subject line.

At the Walter and Eliza Hall Institute, we strive to ensure our staff and students enjoy a great working environment. We value diversity and gender equity in our workforce and promote flexible working arrangements for staff to balance working requirements and personal needs.

Job link: https://www.wehi.edu.au/research-officer-autism-genomics-imaging-population-health-immunity-division 

 

Bioinformatics Analyst, Melbourne

Location: Population Health & Immunity Division, Walter and Eliza Hall Institute of Medical Research

Closing date: Fri, 08/09/2017 - 5:00pm

Position description:

The position is a split appointment, with the successful applicant working 0.5FTE of the time on bioinformatics analysis tasks across the divisions and the other 0.5FTE on research projects specific to the Bahlo laboratory. Professor Melanie Bahlo will be the principal supervisor, with the successful applicant joining the Bahlo Laboratory.

The WEHI has one of the largest computational biology research groups in Australia, with a reputation for developing statistical and computational methodology that has become widely used around the world. The Population Health and Immunity Division generates genomic, transcriptomic and proteomic data from population-based studies, in particular from the two malaria parasites, p. falciparum and p.vivax. Several lab heads are members of the MalariaGen consortium generating substantial genomic datasets numbering 1000s of genomes. Several labs within the division have recently been awarded an international plasmodium data generation grant, which will produce substantial new data. The applicant will be involved in the analysis of this exciting data.

The Bahlo laboratory has a long track record of developing analysis methods and software for genetic and transcriptomic data, in particular next generation sequencing data. New generations of next generation sequencing technologies will also be used in the division and the successful applicant is expected to develop pipelines for the analysis of long-read sequencing data such as PacBio and minION sequencing data, working closely with other researchers at the WEHI.

The appointee will undertake data processing and bioinformatics analyses of data generated by labs within the division on a per needs basis. The work is highly likely to lead to high-impact publications, to which the successful applicant is expected to contribute. The applicant will need to be collaborative, connecting the needs of different labs. There will be opportunities for the delivery of simple programming workshops (e.g. introduction to R or high performance computing) to members of the Division.

Applicants with a PhD or MSc in a relevant discipline are welcome to apply. Relevant disciplines include computer science, mathematics, statistics, computational biology or bioinformatics. Applicants need to have experience in the analysis of next generation sequencing data and demonstrate broad bioinformatics data analysis experience. The position requires high-level project-management skills, strong programming and data analysis skills (R, at least one of Python or Perl and strong unix skills) and, in particular strong communication skills, to ensure excellent communication as a key person working between laboratories within the division.

The Institute is highly supportive of women scientists. A new childcare facility will commence building in early 2017 with a proposed completion date of 2018. Attractive awards including a childcare fellowship (Craven and Shearer Award) and additional technical assistance (Page Betheras Award) during and after maternity leave. Mentoring programs and a strong postdoctoral association contribute to an outstanding career opportunity for an ambitious junior postdoc.

The positions will be for 2 years in the first instance with a probation period of 6 months. Salary is dependent upon qualifications and experience. Up to 17% superannuation and attractive salary packaging options are available. The position is advertises as full time but could be negotiated to be part-time.

General enquiries should be directed to Professor Melanie Bahlo.

A position description is available.

Written applications including cover letter, CV and the names of 3 professional referees should be emailed in PDF format to jobapplications@wehi.edu.au, quoting reference WEHI/CAMBA in the subject line.

Job link: https://www.wehi.edu.au/bioinformatics-analyst-population-health-immunity-division