Computational Biologist

Position title: Computational Biologist

Employer: Telethon Kids Institute

Closing date: 22.11.22

Brief position description: We are now seeking a talented Computational Biologist to join our rare disease and precision health program. The focus of this role is to accelerate the adoption of genomic medicine approaches in healthcare through the application of machine learning and artificial intelligence techniques.

Job website: http://www.seek.com.au/job/59118589

Contact name: Timo Lassmann

Contact email: timo.lassmann@telethonkids.org.au

Genomic Scientist

Position title: Genomic Scientist

Employer: Sequins (Australia)

Closing date: 30/11/2022

Brief position description: INNOVATIVE OPPORTUNITY IN GENOMICS

• Join a start-up team backed by venture capital funding
• Work closely with the founding scientist, A/Prof Tim Mercer
• Unique opportunity for cutting edge research with commercialisation

Become a part of a fast-paced biotechnology start-up developing innovative solutions to improve the quality of genome sequencing and clinical diagnostics.


ABOUT US
Sequins core technologies include a widely published program originating at the Garvan Institute of Medical Research (in Sydney). The platform combines synthetic spike-in DNA and RNA controls with bioinformatic software used during genome sequencing to increase the accuracy, performance, and quality of genomic data.


With your experience developing and using bioinformatic tools for clinical genomics and exposure to diagnostic platforms, you will collaborate with industry and production partners, and provide hands-on support implementing and shaping the Sequins platform.


ABOUT YOU
You are a motivated and talented scientist wanting to be an early and foundational member of a team at the forefront of genomics technologies. You are also a problem solver with a meticulous attention to detail and keen observation skills. With genomic and bioinformatic knowledge and laboratory experience, you will contribute to the development of new controls and pipelines for genomic sequencing applications while working with other smart, ambitious individuals.


ESSENTIAL CRITERIA
· Strong verbal and written communication skills
· Understanding of genomics and personalised medicine
· Experience with bioinformatics, NGS protocols and analysis of next-generation sequencing data
· Ability to work effectively both autonomously and as part of a team
· Enthusiastic and innovative in approaching new challenges

DESIRABLE
· Proficiency with programming (Python) and source code management
· Demonstrated genomic analysis experience, including relevant software and bioinformatics tools
· Experience with process development, method validation, and document management and control (including version status, approval, and document review)
· Experience in using and managing high-performance computing
· Understanding of clinical diagnostics and clinical interpretation of genomics data
· PhD in related disciplines.


KEY RESPONSIBILITIES
· Analysing and interpreting next-generation (genome) sequencing data (for example GATK, MuTect)
· Designing new synthetic genome (DNA and RNA) controls according to product specifications, using Sequins technology and contributing to its further development
· Preparing reports, procedures, and processes to support the design and use of synthetic DNA products and genome sequencing
· Researching and innovating in new synthetic genome controls
· Supporting the company’s broader research and development efforts, including process and quality improvement, method validation and establishment of new services
· Engaging and supporting external technical scientists
· Collaborating with a dynamic team to develop new genomic products
· Documenting workflows and process development
· Providing technical project management and reporting

BENEFITS ON OFFER
· A full-time role with a base salary in the range of $100K-150K AUD plus superannuation and benefits
· Work with cutting edge technology and the scientists behind high-impact publications
· Flexible work arrangements
· Playing a fundamental role in developing new biotechnologies for genomic testing
· Participation in the company Equity Incentive Plan.
· On-going training and development nationally and internationally
· Opportunities for interstate and international travel

Job website: http://sequins.bio

Contact name: David Barda

Contact email: david.barda@sequins.bio

Bioinformatics Research Officer (OceanOmics Centre) @ WA

Position title: Bioinformatics Research Officer (OceanOmics Centre)

Employer: University of Western Australia

Closing date: 10 November 2022

Brief position description: We have two full time bioinformatics positions (Level 5 or Level 6) to support an ambitious marine genomics program to build a world-leading marine vertebrate reference genome library to support ocean conservation.

About the team
The Minderoo OceanOmics Centre at UWA combines a joint Ocean Genomes Laboratory, an OceanOmics Laboratory, and Computational Biology resources. Equipped with the latest high-throughput sequencing technology and in collaboration with national and global partners, the Ocean Genomes Laboratory will generate a comprehensive library of high-quality marine vertebrate reference genome assemblies. All such reference genome data will be subject to rigorous QA/QC and all assemblies will be released publicly with open access.

The Ocean Genomes Laboratory will undertake research and development under the direction of Minderoo’s ambitious OceanOmics Program which has the goal of revolutionising ocean conservation through novel marine sampling and genomics approaches and scaling these to significantly advance our knowledge of marine life. The Ocean Genomes Laboratory will include state of the art infrastructure including sample and eDNA preparation areas, flow cytometry, single cell sequencing equipment and the latest bioinformatics and computational biology tools.

About the opportunity
As the appointee you will, under general direction, support the development and implementation of bioinformatics tools and workflows for large-scale DNA sequencing and genome assembly of marine vertebrates, helping the centre assemble hundreds of platinum-level genomes with high-quality annotations. You will play a critical role in the quality control, security and sharing of genomic data. Appointments may be made at Level 5 or Level 6, commensurate with experience.

About you
You will have hands-on experience in genome assembly and/or developing large bioinformatics workflows, with drive to understand and protect marine biodiversity. The ideal candidate will have excellent attention to detail and a commitment to quality, reproducibility and clear documentation. You will have excellent organisations skills, able to juggle multiple projects, and work well in a diverse team with different backgrounds.

Follow the job URL below or get in touch for more information.

Job website: http://external.jobs.uwa.edu.au/cw/en/job/512865

Contact name: Rich Edwards

Contact email: rich.edwards@uwa.edu.au

Research Assistant @ VIC

Position title: Research Assistant

Employer: Peter MacCallum Cancer Centre

Closing date: 20 Novemeber 2022

Brief position description: Applications are invited to join an exciting research program within the Molecular Biomarkers and Translational Genomics Laboratory led by Sarah-Jane Dawson at the Peter MacCallum Cancer Centre (www.thedawsonlab.com). The research will explore the use of circulating tumour DNA to study genomic and transcriptional evolution and provide insights into treatment response and resistance in cancer.

This 1.0EFT position is for a research assistant to provide bioinformatics support for a variety of projects. The position will involve the analysis of large-scale genomic data, through the application of best-practice bioinformatics workflows and the development of innovative methods as required. The position will require a highly motivated bioinformatician or computational biologist to provide support for a variety of projects. The role will include the analysis of a range of next generation sequencing data, including targeted sequencing, whole genome sequencing, RNA sequencing and DNA methylation analysis. Applicants should have demonstrated experience developing and maintaining bioinformatics analysis workflows. Experience working with cloud computing, containers and version-controlled pipelines is desirable but not required.

The position will require a highly motivated and skilled bioinformatician or computational biologist with expertise in the analysis of next generation sequencing data, integration of genome-wide datasets, competency in programming languages R and/or Python/Perl and experience with working on a high-performance computing cluster. The individual will collaborate very closely with other bioinformaticians and cancer molecular biologists to work on joint initiatives.

The position will be in a research environment that includes a large and interactive group of bioinformaticians and computational biologists in the Computational Cancer Biology Program and the Bioinformatics Core Facility. The position will be initially for a fixed term of 12 months with the opportunity to extend. Remuneration will be commensurate with qualifications and experience.

Job website: http://careers.petermac.org/job/MELBOURNE-Research-Assistant-SJ-Dawson-Lab-VIC-3000/932787010/

Contact name: Dineika Chandrananda

Contact email: Dineika.Chandrananda@petermac.org

Research Assistant @ VIC

Position title: Research Assistant

Employer: Peter MacCallum Cancer Centre

Closing date: 18 November 2022

Brief position description: Applications are invited to join an exciting research program within Mark Dawson’s Laboratory (www.thedawsonlab.com)at the Peter MacCallum Cancer Centre. The research will explore the molecular mechanisms of clonal dominance in normal development and in cancer biology to provide insights into cell fate decisions, normal and malignant stem cell renewal, treatment response and resistance in cancer.

The position will involve the analysis of large-scale single cell data through the application of best-practice bioinformatics workflows and the development of innovative methods as required. The position will require a highly motivated bioinformatician or computational biologist to provide support for a variety of projects that build on innovative methods including SPLINTR (Fennell, Vassiliadis et al; Nature 2022). The role will include the analysis of a range of next generation sequencing data, including scRNA-seq, scChIP-seq, scATAC-seq and other emerging single cell platforms. The role requires competency in programming languages R and Python/Perl and will involve working on a high-performance computing cluster. The individual will collaborate very closely with other bioinformaticians, cancer cell and molecular biologists to work on joint initiatives.

The position will be in a research environment that includes a large and interactive group of bioinformaticians and computational biologists in the Computational Cancer Biology Program and the Bioinformatics Core Facility. The position will be initially for a fixed term of 12 months with the opportunity to extend. Remuneration will be commensurate with qualifications and experience.

Job website: http://careers.petermac.org/job/MELBOURNE-Research-Assistant-M-Dawson-Lab-VIC-3000/932662810/

Contact name: Enid Lam

Contact email: enid.lam@petermac.org


Post Doctoral Researcher @ VIC

Position title: Post Doctoral Researcher

Employer: Peter MacCallum Cancer Centre

Closing date: 18 November 2022

Brief position description: Applications are invited to join an exciting research program within the Molecular Biomarkers and Translational Genomics Laboratory led by Sarah-Jane Dawson at the Peter MacCallum Cancer Centre (www.thedawsonlab.com). The research will explore the use of circulating tumour DNA to study genomic and transcriptional evolution and provide insights into treatment response and resistance in cancer.

The position will involve the analysis of large-scale genomic data, with a focus on whole genome sequencing, through the application of best-practice bioinformatics workflows and the development of innovative new methods as required. Applicants should have demonstrated experience developing and maintaining bioinformatics analysis workflows. Experience working with cloud computing, containers and version-controlled pipelines is desirable but not required.

The position will require a highly motivated and skilled bioinformatician or computational biologist with expertise in the analysis of next generation sequencing data, integration of genome-wide datasets, competency in programming languages R and/or Python/Perl and experience with working on a high-performance computing cluster. The individual will be responsible for driving their own specified projects, but will also collaborate very closely with cancer molecular biologists to work on joint initiatives.

The position will be in a research environment that includes a large and interactive group of bioinformaticians and computational biologists in the Computational Cancer Biology Program and the Bioinformatics Core Facility. The position will be initially for a fixed term of 12 months with the opportunity to extend. Remuneration will be commensurate with qualifications and experience.

Job website:http://careers.petermac.org/job/MELBOURNE-Post-Doctoral-Researcher-Molecular-Biomarkers-and-Translational-Genomics-Laboratory-VIC-3000/932665510/

Contact name: Dineika Chandrananda

Contact email:Dineika.Chandrananda@petermac.org


Bioinformatician @ VIC

Position title: Bioinformatician

Employer: Peter MacCallum Cancer Centre

Closing date: 8th November 2022

Brief position description: The Bowtell Lab are seeking an experienced bioinformatician with strong data analysis and processing skills to enhance and support the analysis framework for multi-omics data from ovarian cancer patients. The position involves the analysis and management of large-scale multi-omic data through the application of best-practice bioinformatics workflows and the deployment of innovative methods as required. The position requires a highly motivated and skilled bioinformatician or computational biologist with expertise in the analysis of cancer DNA sequencing (whole-genome, targeted) and RNA sequencing data, integration of genome-wide datasets, proficiency in programming languages (R and UNIX) and experience with working on high-performance computing clusters. The incumbent will work closely with researchers and clinicians within the Bowtell laboratory and collaborate with other national and international teams to help facilitate joint initiatives.

Job website:http://careers.petermac.org/s/oBIhmJ

Contact name: Dale Garsed

Contact email: dale.garsed@petermac.org

Senior Research Fellow - Australian Centre fo Blood Diseases @ VIC

Position title: Senior Research Fellow - Australian Centre fo Blood Diseases

Employer: Monash University

Closing date: 25 October 2022

Brief position description: The Senior Research Fellow (Bioinformatician) will make independent or original contributions to the research effort within their field of expertise and to the organisational unit or inter-disciplinary area of which they are a part. The Senior Research Fellow will provide expert advice to researchers at the Central Clinical School, will exercise some degree of leadership in research, and will coordinate the growing bioinformatics community at that site. The Senior Research Fellow would be expected to spend most of their time at the Central Clinical School based at the Alfred Hospital, however, will also work with the Monash Bioinformatics Platform alongside a team of expert bioinformaticians at Clayton on a regular basis. The Monash Bioinformatics Platform is a team that provides a hub for research collaborations in bioinformatics, and training as well as facilitating broader collaborations across Monash University’s research groups.

The Senior Research Fellow will conduct research and produce papers and publications. The role will also supervise administrative staff and coordinate a Masters/PhD level unit on Bioinformatics in one semester. Where appropriate, the Senior Research Fellow may lead research teams or manage projects and will be responsible for preparing research proposal submissions to external funding bodies.

The successful candidate will have a doctoral qualification in a relevant discipline such as such as biology, computer science, physics, statistics or bioinformatics or equivalent accreditation and standing together with subsequent research experience. Experience in bioinformatics analysis, in particular, in cancer genomics, transcriptomics and knowledge of R, is required for success in this role. The successful candidate will have strong communication skills, high-level organisational skills and experience supervising and mentoring research staff.

This role is a full-time position; however, flexible working arrangements may be negotiated.

At Monash University, we are committed to being a Child Safe organisation. Some positions at the University will require the incumbent to hold a valid Working with Children Check.

Job website: https://careers.pageuppeople.com/513/cw/en/job/641277/senior-research-fellow-australian-centre-for-blood-diseases?mc_cid=8da30db82e&mc_eid=0e960209d2

Contact name: Deanna Deveson-Lucas

Contact email: deanna.deveson@monash.edu

Research scientist - Biostatistics, Molecular diagnostics @ NSW

Position title: Research scientist - Biostatistics, Molecular diagnostics

Employer: CSIRO

Closing date: 31 October 2022

Brief position description: CSIRO Health and Biosecurity is seeking a Research Scientist/Engineer to join their Molecular Diagnostics team based at the Westmead Health Precinct.

Job website:http://jobs.csiro.au/job/Sydney%2C-NSW-Research-scientist-Biostatistics%2C-Molecular-diagnostics/931941810/

Contact name: Shree Chattopadhyay

Contact email: careers.online@csiro.au

Frontend Developer @ NSW

Position title: Frontend Developer

Employer: University of Sydney

Closing date: 17th October 2022

Brief position description: As a Frontend Developer, you will develop, deploy, support, maintain, and continuously improve the frontend of national data analytics platforms and services. Your contribution will enable life scientists to perform research in areas of national significance. This includes saving Australia’s threatened species, treating aggressive cancers, sustainability, food security and other areas in the environmental, agricultural, and biomedical sciences.

This is part of a ~$54M project, funded by the Australian Government (National Collaborative Research Infrastructure Strategy (NCRIS) via Bioplatforms Australia) and partners across Australia. You will collaborate with a diverse range of national and commercial organisations, including the Australian BioCommons, Australia’s Tier1 high-performance computing facilities of NCI and Pawsey, commercial cloud platforms of AWS, Azure and Google Cloud, and life sciences platforms operated by partners in the EU and USA.

Job website:https://usyd.wd3.myworkdayjobs.com/en-US/USYD_EXTERNAL_CAREER_SITE/details/Frontend-Developer_0097377-3

Contact name: Kale Claffey

Contact email: kale.claffey@sydney.edu.au