Poster sessions
Poster session 1
Poster Number, Submitting Author, Title
Mark Daniel Ziemann, Digital Expression Explorer 2: a repository of uniformly processed RNA sequencing data for several important model species
Khelina Fedorchuk, 3D segmentation and tracking of cells using deep convolutional neural networks
Vindhya Vasini Shatdarsanam, Identifying epistasis underlying Age-related Macular Degeneration (AMD) to understand the genetic architecture of the disease.
Feargal Ryan, Alterations in blood gene expression and the composition of the gut microbiota in preterm infants diagnosed with bronchopulmonary dysplasia
Jumana Yousef, Geographical attribution of Ricinus communis using Single Nucleotide Polymorphisms
Jacob Munro, Optimised design of amplicons for deep sequencing in Plasmodium vivax infections
Ali Mahmoudi, Inference under the coalescent with recombination using a new data structure
Monther Alhamdoosh, AbSeq: unravelling the unknowns in antibody library construction and bio-panning for drug discovery
Ramyar Molania, Removing unwanted variation from TCGA RNA-seq data using pseudo- replicates
Yiwen Wang, Adjusting for batch effects in microbiome data
Ruebena Dawes, Gene discovery informatics toolkit defines candidate genes for unexplained infertility and prenatal/infantile mortality.
Paul Angel, The Cell Landscape in Stemformatics
Chelsea Mayoh, Molecular Profiling Results of the Zero Childhood Cancer Program: A Precision Medicine Platform for Children with High-Risk Cancer
Jarny Choi, Stemformatics: visualise and download curated stem cell data
Marcela Cespedes, Fast unsupervised feature selection for quantiative biological data using mixture models
James Hogan, Comparative Visualisation of Regulatory Networks at Scale
James Hogan, The Bad Visualisation Project
Jan Piotr Buchmann, EndoVir: A Pipeline for Discovery of Novel Endogenous Viruses
Liam Fearnley, Computational challenges in pgRNA CRISPR screen design
Moshe Olshansky, Very fast computing of the first eigenvector of the correlation matrix of a sparse matrix with applications to HiC data analysis
Shaun Carswell, Tissue-of-origin prediction via rank correlation of expression profiles from long-read RNA signal
Simon Sadedin, Bazam: a rapid and convenient tool for realignment of genomic data
Rebecca Poulos, Scarcity of recurrent regulatory mutations in colorectal cancer revealed by targeted deep sequencing
YongKiat Wee, Identification of novel prognosis-related genes associated with cancer using integrative network analysis
Richard Lupat, Using Deep Learning Techniques to Predict Prognostic Genes from Breast Cancer Datasets
Leon Di Stefano, Nix for reproducible research
Alexandra Garnham, Pathway-VisualiseR
Ning Liu, A glance at the 3D genome structure of regulatory T cells with in situ HiC
Anup Shah, LFQ-Analyst: An interactive web-platform to analyse quantitative proteomics data
Simon Gladman, The Galaxy Australia bioinformatics infrastructure platform.
Tulio Campos, A systematic evaluation of eukaryotic essential gene predictions using machine-learning algorithms trained with protein sequence-derived features
Haloom Rafehi, Estimating mutation age using shared ancestral haplotypes
Nicholas C. Wong, De-novo assembly of the Papio hamadryas genome.
Waruni Abeysekera, Identifying Hepatitis B virus integration events on Mouse genome
Nicolas Canete, High-throughput analysis of multidimensional microscopy to visualise HIV and its target cell interactions in situ
Greg Bass, ConCoR: A software pipeline for high-throughput image analysis of time-dependent colocalization data
Piumi Rajapaksha, 16S rDNA Meta-genomic Analysis of Bacterial Diversity Associated with Seed Potato Imported into Sri Lanka for Cultivation
Cameron Jack, Oz Mammals Genomics Initiative Target Capture Cloud Platform (TCCP)
Emma Gail, Systematic mapping of molecular interactions within the epigenetic modifier complex PRC2 provides a mechanistic framework for its functional diversity
Allan Motyer, Single Cell Whole Genome Sequencing – A Comparison of NGS Platforms
Andrian Yang, Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
Qing Wang, Comprehensive evaluation of somatic variant detection algorithms using Ion Torrent targeted deep sequencing data
Eddie K.K. Ip, Genetic burden in a Whole Genome Sequenced heterogeneous cohort of Congenital Heart Disease cases.
Peter Georgeson, Identifying and characterising high resolution mutational signatures from DNA mismatch repair deficient tumours
Ismael Vergara, Exploring the clinical implications of tetraploidization and aneuploidy in melanoma and other cancers
Kajal Zibaei, Quantifying clonal responses to determine how the T cell response is regulated
Benjamin Goudey, Improved HLA-based prediction of coeliac disease using genomic risk score methodologies identifies two novel HLA risk modifiers and improves clinical testing.
Milioli, HH, ANDROGEN RECEPTOR SIGNALLING IN ENDOCRINE-RESISTANT ER-POSITIVE BREAST CANCER
Samaneh Farashi, Causal variants that underlie miR-eQTLs in Prostate Cancer
Sarah Williams, Celaref: Annotating single-cell RNAseq clusters by similarity to reference datasets
Mark B Schultz, HAVIC: a bioinformatics pipeline for Hepatitis A Virus Infection Cluster detection
Poster session 2
Pasi Korhonen, Common Workflow Language (CWL)-based software pipeline for de novo genome assembly from long- and short-read data
Jake Bradford, A Performance Review of Computational Tools for CRISPR-Cas9 Guide Design
Abolfazl JalalAbadi, Combining independent single-cell RNA-seq studies using a component-based approach
Aparna Elangovan, Application of deep learning in weakly supervised biomedical relation extraction
Rick M Tankard, Detecting disease-causing repeat expansions in next-generation sequencing data
Dharmesh Bhuva, Evaluation and characterisation of differential co-expression analysis methods
Agus Hartoyo, Sloppy parameters in fitting a non-linear model for brain dynamics
Melanie Smith, A comprehensive miRSeq profile of miRNA in the human placenta across early gestation.
Monika Mohenska, TINC: A method to dissect transcriptional complexes at single locus resolution
Timothy Peters, Genome-wide bisulfite sequencing of rogue and memory B cells using scBS-Seq
Stuart Archer, Analysing Translation Complex Profiling data to find mechanisms of translation regulation.
Luke Gandolfo, Batch or biology? Using RLE plots to visualize the difference in the presence of confounding
Katalina Bobowik, Regulatory variation and selection in traditional populations of Southeast Asia
Brendan Robert E. Ansell, Leveraging public transcriptomics data to understand retinal health and disease
Megan Soon, Lineage tracing of effector to memory transitions in CD4+ T cells during malaria using single-cell RNA-seq.
Asa Perez-Bercoff, Using structural variant detection to resolve difficult regions of a genome assembly
Meng How Tan, Direct RNA sequencing using nanopores
Tingting Gong, A critical look at somatic structural variant detection for cancer genomics
Steve Monger, Spliceogen: an integrative tool for comprehensive discovery of splice-altering variants on the genome scale
Heeva Baharlou, Autofluorescence Remover: A Novel Method to Identify and Remove Tissue Autofluorescence
Kirsti Paulsen, Optimising intrinsic protein disorder prediction for short linear motif discovery
Matthew Z DeMaere, bin3C : Hi-C mediated retrieval of metagenome-assembled genomes (MAGs)
Jason Whyte, Biological modelling, and rarely asked questions of the 21st century
Sara Ettamimi, Taxonomic characterization and functional analysis of microbial diversity in Moroccan rivers using a metagenomics approach
Hannah Huckstep, Signalling Networks in the Analysis of Proteomic Data
Katarina Stuart, Evolution in invasive populations: using genomics to reveal drivers of invasion success in the Australian European starling (Sturnus vulgaris) introduction across Australia.
Jieun Hani Kim, Reconstruction of dynamic transcriptional networks during pluripotency transition by adaptive learning of trans-omics
Marie Trussart, Development of new computational methods to elucidate the molecular dynamics of drug treatment using CyTOF
Chi Nam Ignatius Pang, Benchmarking Protein Correlation Profiling datasets against reference protein complexes: case studies in S. cerevisiae
Kevin Wang, RUV-Pro: Remove Unwanted Variation in prospective omics experiments
Carolyn de Graaf, Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans
Kirill Tsyganov, Making better use of the lost reads in RNA-seq data
Sungbo Cho, Feather pecking behaviour is related to specific amino acid degradation in the proventriculus of laying hens
Andrew Lonsdale, Oncopipe: a clinical pipeline for cancer RNA-seq
Alistair Chalk, RNA editing in an editing deficient Adar1 mouse model
Maina Bitar, The transcriptional landscape of neuronal stem-cells across life-stages reveals unexplored pathways towards the understanding of ageing
Peter Kozulin, A de novo transcriptomic investigation of the Australian fat-tailed dunnart marsupial reveals molecular heterochronies of the mammalian neocortex
Jason Steen, Comparison of variant callers for use with Hi-Plex targeted sequencing panels
Peter Hickey, Developing 'standard' bioinformatics analyses for the Single Cell Open Research Endeavour (SCORE)
Shila Ghazanfar, Examining measures of cell damage in association with specific cell types for droplet-based single cell RNA-Sequencing technologies
Kitty Lo, Detecting alternative polyadenylation in single cell RNAseq experiments
Ju Yeon Jung, Ancestry informative genetic markers for six Asian populations
Holly Whitfield, MicroRNA-Mediated Regulatory Networks within Breast Cancer Progression
Susan Corley, QuantSeq 3' sequencing paired with Salmon quantification provides a fast reliable approach for high throughput transcriptomic analysis
Mirana Ramialison, 3D-cardiomics: a three-dimensional digital map of the cardiac transcriptome
Mengbo Li, Using Omics Data to Guide Classification in Neuroimaging Studies of Brain Diseases
Anushi, Evaluation of De Novo mutation Calling Tools
Daniel Cameron, GRIDSS2: Detecting breakpoints in repetitive sequence
Xabier Vázquez-Campos, OTUreporter: an automated pipeline for the analysis and report of amplicon sequencing data
Luis Lara, Reconstructing the Evolutionary Trajectories of BIG 1-98
Andrew Bakshi, Computational reconstruction of the evolution an aggressive prostate cancer with a rare morphology
Shivakumar Keerthikumar, Development of Prostate Cancer Database: Integration of clinical, experimental and genomic data of prostate cancer cohorts