Bioinformatician @ VIC

Position title: Bioinformatician

Employer: Peter MacCallum Cancer Centre

Closing date: 8th November 2022

Brief position description: The Bowtell Lab are seeking an experienced bioinformatician with strong data analysis and processing skills to enhance and support the analysis framework for multi-omics data from ovarian cancer patients. The position involves the analysis and management of large-scale multi-omic data through the application of best-practice bioinformatics workflows and the deployment of innovative methods as required. The position requires a highly motivated and skilled bioinformatician or computational biologist with expertise in the analysis of cancer DNA sequencing (whole-genome, targeted) and RNA sequencing data, integration of genome-wide datasets, proficiency in programming languages (R and UNIX) and experience with working on high-performance computing clusters. The incumbent will work closely with researchers and clinicians within the Bowtell laboratory and collaborate with other national and international teams to help facilitate joint initiatives.

Job website:http://careers.petermac.org/s/oBIhmJ

Contact name: Dale Garsed

Contact email: dale.garsed@petermac.org

Senior Research Fellow - Australian Centre fo Blood Diseases @ VIC

Position title: Senior Research Fellow - Australian Centre fo Blood Diseases

Employer: Monash University

Closing date: 25 October 2022

Brief position description: The Senior Research Fellow (Bioinformatician) will make independent or original contributions to the research effort within their field of expertise and to the organisational unit or inter-disciplinary area of which they are a part. The Senior Research Fellow will provide expert advice to researchers at the Central Clinical School, will exercise some degree of leadership in research, and will coordinate the growing bioinformatics community at that site. The Senior Research Fellow would be expected to spend most of their time at the Central Clinical School based at the Alfred Hospital, however, will also work with the Monash Bioinformatics Platform alongside a team of expert bioinformaticians at Clayton on a regular basis. The Monash Bioinformatics Platform is a team that provides a hub for research collaborations in bioinformatics, and training as well as facilitating broader collaborations across Monash University’s research groups.

The Senior Research Fellow will conduct research and produce papers and publications. The role will also supervise administrative staff and coordinate a Masters/PhD level unit on Bioinformatics in one semester. Where appropriate, the Senior Research Fellow may lead research teams or manage projects and will be responsible for preparing research proposal submissions to external funding bodies.

The successful candidate will have a doctoral qualification in a relevant discipline such as such as biology, computer science, physics, statistics or bioinformatics or equivalent accreditation and standing together with subsequent research experience. Experience in bioinformatics analysis, in particular, in cancer genomics, transcriptomics and knowledge of R, is required for success in this role. The successful candidate will have strong communication skills, high-level organisational skills and experience supervising and mentoring research staff.

This role is a full-time position; however, flexible working arrangements may be negotiated.

At Monash University, we are committed to being a Child Safe organisation. Some positions at the University will require the incumbent to hold a valid Working with Children Check.

Job website: https://careers.pageuppeople.com/513/cw/en/job/641277/senior-research-fellow-australian-centre-for-blood-diseases?mc_cid=8da30db82e&mc_eid=0e960209d2

Contact name: Deanna Deveson-Lucas

Contact email: deanna.deveson@monash.edu

Research scientist - Biostatistics, Molecular diagnostics @ NSW

Position title: Research scientist - Biostatistics, Molecular diagnostics

Employer: CSIRO

Closing date: 31 October 2022

Brief position description: CSIRO Health and Biosecurity is seeking a Research Scientist/Engineer to join their Molecular Diagnostics team based at the Westmead Health Precinct.

Job website:http://jobs.csiro.au/job/Sydney%2C-NSW-Research-scientist-Biostatistics%2C-Molecular-diagnostics/931941810/

Contact name: Shree Chattopadhyay

Contact email: careers.online@csiro.au

Frontend Developer @ NSW

Position title: Frontend Developer

Employer: University of Sydney

Closing date: 17th October 2022

Brief position description: As a Frontend Developer, you will develop, deploy, support, maintain, and continuously improve the frontend of national data analytics platforms and services. Your contribution will enable life scientists to perform research in areas of national significance. This includes saving Australia’s threatened species, treating aggressive cancers, sustainability, food security and other areas in the environmental, agricultural, and biomedical sciences.

This is part of a ~$54M project, funded by the Australian Government (National Collaborative Research Infrastructure Strategy (NCRIS) via Bioplatforms Australia) and partners across Australia. You will collaborate with a diverse range of national and commercial organisations, including the Australian BioCommons, Australia’s Tier1 high-performance computing facilities of NCI and Pawsey, commercial cloud platforms of AWS, Azure and Google Cloud, and life sciences platforms operated by partners in the EU and USA.

Job website:https://usyd.wd3.myworkdayjobs.com/en-US/USYD_EXTERNAL_CAREER_SITE/details/Frontend-Developer_0097377-3

Contact name: Kale Claffey

Contact email: kale.claffey@sydney.edu.au

Sequencing Specialist (OceanOmics Centre, Ocean Genomes Laboratory) @ WA

Position title: Sequencing Specialist (OceanOmics Centre, Ocean Genomes Laboratory)

Employer: University of Western Australia (UWA)

Closing date: 27 Oct 2022

Brief position description: The Minderoo OceanOmics Centre at UWA combines a joint Ocean Genomes Laboratory, an OceanOmics Laboratory, and Computational Biology Services.

Equipped with the latest high-throughput sequencing technology and in collaboration with global partners, the Ocean Genomes Labortory will generate a comprehensive library of high quality marine vertebrate reference genome assemblies. All such reference genome data will be subject to rigorous QA/QC and all assemblies will be released publicly with open access.

The Ocean Genomes Laboratory will undertake research and development under the direction of Minderoo’s ambitious OceanOmics Program which has the goal of revolutionising ocean conservation through novel marine sampling and genomics approaches and scaling these to significantly advance our knowledge of marine life. The Ocean Gemomes Laboratory and Computational Biology Services will include state of the art infrastructure including sample and eDNA preparation areas, flow cytometry, single cell sequencing equipment and the latest bioinformatics and computational biology tools.
As the appointee you will, under general direction, provide a high level of genomics and eDNA specific technical support to academics, technical staff and students for practical activities undertaken within the OceanOmics Centre Ocean Genomes Laboratory.

You will have hands-on expertise in genomic sequencing from metazoans with a drive to protect marine environments. Your experience delivers an in-depth understanding of sample extraction, library preparation and long read sequencing workflows, and familiarity with digitisation of related methodologies and progress. You will have advanced organisation skills and be a team player, adding value to and leading teams to achieve mutual goals.

Job website:http://external.jobs.uwa.edu.au/cw/en/job/512557?lApplicationSubSourceID=

Contact name: Richard Edwards

Contact email:rich.edwards@uwa.edu.au

Post-Doctoral Research Officer - Bioinformatics @ VIC

Position title: Post-Doctoral Research Officer - Bioinformatics

Employer: St Vincent's Institute of Medical Research

Closing date: 25/10/2022

Brief position description: St Vincent’s Institute (SVI) is an internationally recognized independent research organization, based on the St Vincent’s Hospital Campus on the edge of Melbourne’s CBD. The Institute has a dedicated team of over 250 staff and students, who are committed to improving the health and life-expectancy of Australians. We focus on common diseases that represent major health issues for Australians today, including diabetes, bone diseases, cancer, cardiovascular disease, obesity and Alzheimer’s disease. With an exceptional pool of talented researchers and a growing number of state-of-the-art facilities, we are enthusiastic about the future.

Laboratory & Research Focus:

The DNA Repair and Recombination Laboratory is an established research group at SVI, focused on understanding the genetic control of DNA repair and recombination and the role that these processes play in inheritance and oncofertility. You will bring your skills as a bioinformatician and will work closely with wetlab researchers in the same team for all experimental stages from planning through to data analysis. You will be a self-motivated researcher with a PhD, first author publications and strengths in bioinformatics, genomics and/or digital image analysis, statistics, computation, and reproducible analyses. The role will be a mixture of semi-autonomous research and providing support as required to the wetlab part of the team. You may have the opportunity to develop your own research projects by negotiation.

To address our biological questions, we use a number of tools that produce large datasets which includes: histological and immunofluorescence microscopy, bulk high-throughput sequencing of genomic DNA, single-cell sequencing of genomic DNA, whole animal phenotyping from pedigrees, and other cell-based phenotypic datasets. The team is specifically interested in performing discovery research and identifying and characterising phenotypes which in turn improves our understanding of our biological interests.

Having a diverse workforce that represents the global and Australian community is very important to our team and we actively encourage applications from Aboriginal and Torres Strait Islanders, people with disabilities, from culturally and linguistically diverse backgrounds, LGBTQIA+ people, and all genders.

NHMRC-funded Position
We are seeking a self-motivated and passionate bioinformatics postdoc to join the DNA Repair and Recombination Laboratory team headed by Associate Professor Wayne Crismani. This role involves:

Performing exploratory data analysis in the areas of genetics and image analysis
Exploratory data analyses should produce hypotheses which can be tested
Advising wet lab scientists on data practices
Wrangling high throughput screening datasets
Package development where appropriate

Essential selection criteria:
-Enthusiasm for science is a must
-PhD in a computational discipline and demonstrable experience bioinformatics, genomics and genetics.
-Proficiency in computer programming and scripting in one or more of the following languages: R, Python, C++, Go, Nim, Rust, Java, Perl, SQL.

Salary: commensurate with experience ranging from $89,606 to $96,187 per annum, plus 10.5% superannuation and generous $15,900 FBT exempt salary packaging.

Position Descriptions: https://www.svi.edu.au/careers_students/careers/current_vacancies

For a confidential discussion about the role: wcrismani@svi.edu.au

Applications via Seek: https://www.seek.com.au/job/58617417

Please submit as PDF's -
- CV (one page max) – Please limit publications to your top three with a brief descriptor of your contribution to these works.

- Cover letter (one page max) – Please explain why you will be a good fit for this role.

Closing date: 25th October 2022

(please note that this is an indicative closing date as we will commence interviewing candidates of interest as they apply and therefore the role may be filled before this date)

Job website: http://www.seek.com.au/job/58617417

Contact name: Wayne Crismani

Contact email: wcrismani@svi.edu.au

Data Engineer

Position title: Data Engineer

Employer: All G Foods

Closing date: 31 October 2022

Brief position description: You have a background in data engineering / data science and a track record for the implementation of data management systems and the analysis of diverse datasets. You will lead the implementation of our data infrastructure, including data ingestion, storage, management and analysis based on FAIR principles. You will work with our scientists, engineers and external collaborators to ensure interoperability of data for harnessing ML/AI data pipelines enabling systems biology approaches to strain development. You have strong, demonstrated ability to program with relevant computational languages (e.g. Python, SQL, R), ideally with publicly accessible examples of code available (e.g. via GitHub) and API integration. You have exceptional interpersonal and communication skills with a high level of discretion and sensitivity when dealing with confidential matters. You hold strong business acumen with the ability to make sound judgement and quick decisions.

About All G Foods

All G Foods is the new disruptive alternative protein company designing a sustainable future for food. We are creating a positive food movement, dedicated to making food all good, for everyone and everything. Backed by high profile investors, we have global ambitions and know that our talented team are our future.

Our mission is to offer delicious and nutritious alternative proteins to all consumers and have an incredibly positive impact on humanity and the planet.

Our growing range of alternative protein food brands across meat and dairy will touch the hearts and souls of millions of people in the coming years, and together achieve massive positive impacts for the greater good. Our first product launched in 2021 with Love BUDS, our deliciously tasty burgers made from plants.

Job website: http://www.linkedin.com/jobs/view/3286958013

Contact name: Jared Raynes

Contact email: jared@allgfoods.com


Senior Scientist, Translational Bioinformatics @ VIC

Position title: Senior Scientist, Translational Bioinformatics

Employer: CSL

Closing date: 9 October 2022

Brief position description: We are hiring a Senior Scientist, Translational Bioinformatics to join our Research team, based at Bio21 Institute, in the heart of Melbourne’s Biomedical Precinct.

In this newly created position, you will provide scientific and technical expertise to help answer biomedical research questions at the pre-clinical and clinical stage of drug development using advanced bioinformatics. You will expand CSL’s R&D capability in Translational Bioinformatics in order to derive biological insights from large-scale multi-omic data available in public and commercial databases, as well as generated from in-house high-throughput sequencing and other omic experiments. These analyses will help answer questions in areas of key importance to CSL’s drug development pipeline, including asset positioning, biomarker discovery, understanding drug mechanisms of action, identifying new drug candidates, and patient stratification.

Working closely with scientists, you will set project objectives and determine and implement data generation, data analytics, and bioinformatics platform development strategies. You will also work alongside CSL’s external collaborators.

Reporting to the Senior Manager, Translational Bioinformatics you will:
* Provide input into experimental design of bioinformatics analyses including transcriptomics (RNA-seq), proteomics, and similar assays
* Carry out and interpret bioinformatics analyses including transcriptomics (RNA-seq) and proteomics
* Contribute to the interpretation and reporting of the biological insights derived from bioinformatics analyses, in collaboration with the Translational Science group
* Work with Research and IT data managers to implement processes for managing translational data and ensure compliance with CSL’s regulatory requirements

To be successful, you will need:
* PhD in bioinformatics, computational biology, computer science, or a related discipline, with significant computational and biomedical components.
* Experience in analysing RNASeq datasets and working with life scientists to draw statistically solid biological insights from data.
* Experience in genomic variant analysis on patient cohorts and/or utilizing genomic variant data from public databases to understand mechanism of action of targets, drug candidates or diseases and support translational biomarkers.
* Experience in applying network biology and pathway analysis algorithms (using open source and/or commercial tools, e.g. IPA).
* Experience in using public databases to answer key research questions related to experimental design, biomarker discovery and patient stratification (e.g., gene expression databases, clinical variants, etc.).
* Experience in working in a Unix-like and high-performance computing (HPC) environment using Python, R and other scientific computing languages.

In return you will receive:
* Fantastic remuneration package and the opportunity to access flexible work arrangements
* Access to health & wellbeing initiatives and programs & access to global employee share plan
* Career progression to help you fulfil your promising future
* Working with Australia’s leading biopharmaceutical company and top 5 ASX listed
* And more!

Apply now to join a purpose-driven, values-based company committed to protecting public health.

Job website:http://csl.wd1.myworkdayjobs.com/CSL_External/job/APAC-AU-Victoria-Parkville-CSL-Limited-Australia/Senior-Scientist--Translational-Bioinformatics_R-181894

Contact name: Nick Wong

Contact email: nicholas.wong@csl.com.au

BioInformatician / Software Engineer @ VIC

Position title: BioInformatician / Software Engineer

Employer: The University of Melbourne

Closing date: 11 Oct 2022

Brief position description: The selected candidate will primarily be responsible for implementing a secure cloud-based system for upload, management, and analysis of Hepatitis C (HCV) and HIV molecular data and selected sample meta-data obtained from public health laboratories (PHLs) in Australia to enable a rapid public health response. In addition, the candidate will be responsible for developing approaches to integrate with traditional epidemiological data. The candidate may also contribute to implementation of visualisation tools on this platform. 

This collaborative effort includes researchers, clinicians, policymakers, and community stakeholders from the Microbiological Diagnostic Unit Public Health Laboratory at the Doherty Institute and the Kirby Institute, UNSW.

Responsibilities include:

Engaging and consulting with users including bioinformaticians, genomics epidemiologists, and government across jurisdictions to develop the molecular epidemiological data platform for HIV and HCV in the H2Seq project
Investigating suitability of existing pathogen molecular epidemiological platforms for adaption to fulfill H2Seq program requirements.
Engaging with bioinformaticians and genomic epidemiologists to develop and implement processes for managing HIV and HCV genomics data on this platform
Interfacing with members of the AusTrakka development team to implement best-practice in development of a cloud-based data management platform and associated web-based visualisation tools.

Job website:http://jobs.unimelb.edu.au/en/job/909959/bioinformatician-software-engineer

Contact name: Lachlan Coin

Contact email: lachlan.coin@unimelb.edu.au

Field Application Scientist (Remote - Australia)

Position title: Field Application Scientist (Remote - Australia)

Employer: Bionano Genomics

Closing date: Oct 30 2022

Brief position description: Preferred Educational Background:
Masters or PhD degree in biological sciences with minimum 3 years of relevant experience in Biochemistry, Molecular Biology, Genetics, or related field. Please note that this position requires wet lab experience as well as data analysis skills.

https://bionano.pinpointhq.com/en/jobs/60799

Job website: https://bionano.pinpointhq.com/en/jobs/60799

Contact name: Nandita Mullapudi

Contact email: nmullapudi@bionanogenomics.com